FairsharingAligner

class FairsharingAligner[source]

Bases: Aligner

Aligner for the FAIRsharing.

Instantiate the aligner.

Attributes Summary

`alt_key_match`	Set this if there's another part of the data besides the ID that should be matched
`curation_header`	Header to put on the curation table, corresponding to `get_curation_row()`
`key`	The key for the external registry
`skip_deprecated`	Set to true if you don't want to align to deprecated resources

Methods Summary

`get_curation_row`(external_id, external_entry)	Prepare curation rows for unaligned BioPortal registry entries.
`getter`([use_tqdm])	Get the FAIRsharing registry.

Attributes Documentation

alt_key_match: ClassVar[Optional[str]] = 'abbreviation': Set this if there’s another part of the data besides the ID that should be matched

curation_header: ClassVar[Sequence[str]] = ('abbreviation', 'name', 'description'): Header to put on the curation table, corresponding to get_curation_row()

skip_deprecated: ClassVar[bool] = True: Set to true if you don’t want to align to deprecated resources

Methods Documentation

get_curation_row(external_id, external_entry)[source]

Prepare curation rows for unaligned BioPortal registry entries.