PrefixCommonsAligner

class PrefixCommonsAligner[source]

Bases: Aligner

Aligner for Prefix Commons.

Instantiate the aligner.

Attributes Summary

`curation_header`	Header to put on the curation table, corresponding to `get_curation_row()`
`include_new`	Should new entries be included automatically? Only set this true for aligners of very high confidence (e.g., OBO Foundry but not BioPortal)
`key`	The key for the external registry

Methods Summary

`get_curation_row`(external_id, external_entry)	Prepare curation rows for unaligned Prefix Commons registry entries.
`getter`()	Get the Life Science Registry.

Attributes Documentation

curation_header: ClassVar[Sequence[str]] = ('name', 'miriam', 'bioportal', 'description', 'example', 'pattern', 'uri_format'): Header to put on the curation table, corresponding to get_curation_row()

include_new: ClassVar[bool] = False: Should new entries be included automatically? Only set this true for aligners of very high confidence (e.g., OBO Foundry but not BioPortal)

Methods Documentation

get_curation_row(external_id, external_entry)[source]

Prepare curation rows for unaligned Prefix Commons registry entries.