UniProtAligner

class UniProtAligner(force_download: bool | None = None)

Bases: Aligner

Aligner for UniProt.

Instantiate the aligner.

Attributes Summary

alt_key_match	Set this if there's another part of the data besides the ID that should be matched
curation_header	Header to put on the curation table, corresponding to get_curation_row()
key	The key for the external registry

Methods Summary

getter()

Get the UniProt registry.

Attributes Documentation

alt_key_match: ClassVar[str | None] = 'abbreviation'

Set this if there’s another part of the data besides the ID that should be matched

curation_header: ClassVar[Sequence[str]] = ('abbreviation', 'name', 'uri_format', 'category')

Header to put on the curation table, corresponding to get_curation_row()

key: ClassVar[str] = 'uniprot'

The key for the external registry

Methods Documentation

getter() → Mapping[str, Mapping[str, str]]

Get the UniProt registry.