OLSAligner

class OLSAligner(force_download: bool | None = None)

Bases: Aligner

Aligner for the OLS.

Instantiate the aligner.

Attributes Summary

curation_header	Header to put on the curation table, corresponding to get_curation_row()
include_new	Should new entries be included automatically? Only set this true for aligners of very high confidence (e.g., OBO Foundry but not BioPortal)
key	The key for the external registry

Methods Summary

get_skip()	Get skipped entries from OLS.
getter()	Get the OLS registry.

Attributes Documentation

curation_header: ClassVar[Sequence[str]] = ('name',)

Header to put on the curation table, corresponding to get_curation_row()

include_new: ClassVar[bool] = True

Should new entries be included automatically? Only set this true for aligners of very high confidence (e.g., OBO Foundry but not BioPortal)

key: ClassVar[str] = 'ols'

The key for the external registry

Methods Documentation

get_skip() → Mapping[str, str]

Get skipped entries from OLS.

getter()

Get the OLS registry.