bioregistry
Getting Started
Reference
Functions
add_resource
add_to_collection
count_mappings
curie_from_iri
curie_to_str
get_appears_in
get_banana
get_biocontext_uri_format
get_bioportal_iri
get_bioportal_prefix
get_bioregistry_iri
get_canonical_for
get_collection
get_collection_prefixes
get_collection_resources
get_contact
get_contact_email
get_contact_github
get_contact_name
get_contact_orcid
get_context
get_converter
get_curie_pattern
get_default_converter
get_default_format
get_default_iri
get_depends_on
get_description
get_example
get_external
get_fairsharing_prefix
get_has_canonical
get_has_parts
get_homepage
get_identifiers_org_curie
get_identifiers_org_iri
get_identifiers_org_prefix
get_iri
get_jskos_download
get_json_download
get_keywords
get_license
get_logo
get_mailing_list
get_mappings
get_miriam_uri_format
get_miriam_uri_prefix
get_n2t_iri
get_n2t_prefix
get_name
get_namespace_in_lui
get_obo_context_prefix_map
get_obo_download
get_obo_health_url
get_obofoundry_iri
get_obofoundry_prefix
get_obofoundry_uri_format
get_obofoundry_uri_prefix
get_ols_iri
get_ols_prefix
get_ols_uri_format
get_ols_uri_prefix
get_organizations
get_owl_download
get_part_of
get_parts_collections
get_pattern
get_pattern_map
get_preferred_prefix
get_prefix_map
get_prefixcommons_uri_format
get_provided_by
get_providers
get_providers_list
get_provides_for
get_rdf_download
get_registry
get_registry_description
get_registry_example
get_registry_homepage
get_registry_invmap
get_registry_map
get_registry_name
get_registry_provider_uri_format
get_registry_short_name
get_registry_short_name_to_prefix
get_registry_uri
get_repository
get_repository_to_prefix
get_resource
get_skos_download
get_synonyms
get_uri_format
get_uri_prefix
get_version
get_versions
get_wikidata_prefix
has_no_terms
is_deprecated
is_mismatch
is_novel
is_obo_foundry
is_proprietary
is_standardizable_curie
is_standardizable_identifier
is_valid_curie
is_valid_identifier
miriam_standardize_identifier
normalize_curie
normalize_parsed_curie
normalize_prefix
parse_curie
parse_iri
read_collections
read_contexts
read_contributors
read_mappings
read_metaregistry
read_mismatches
read_registry
registries
resources
standardize_identifier
write_collections
write_collections()
write_contexts
write_registry
Classes
Class Inheritance Diagram
Alignment
Command Line Interface
Tabular Data Processing
Deploying the Bioregistry
Deploying a custom Bioregistry
Curation
Reference Classes
Validation CLI
bioregistry
Reference
write_collections
View page source
write_collections
write_collections
(
collections
:
Mapping
[
str
,
Collection
]
,
*
,
path
:
Path
|
None
=
None
)
→
None
[source]
Write the collections.