curie_from_iri

curie_from_iri(iri, *, prefix_map=None, use_preferred=False)[source]

Parse a compact identifier from an IRI using parse_iri() and reconstitute it.

Parameters

iri (str) – A valid IRI
prefix_map (Union[Mapping[str, str], List[Tuple[str, str]], None]) – See parse_iri()
use_preferred (bool) – Should the preferred prefix be used instead of the Bioregistry prefix (if it exists)?

Return type

Optional[str]

Returns

A CURIE string, if the IRI can be parsed by parse_iri().

IRI from an OBO PURL:

>>> curie_from_iri("http://purl.obolibrary.org/obo/DRON_00023232")
'dron:00023232'

IRI from the OLS:

>>> curie_from_iri("https://www.ebi.ac.uk/ols/ontologies/ecao/terms?iri=http://purl.obolibrary.org/obo/ECAO_1")
'ecao:1'

IRI from native provider

>>> curie_from_iri("https://www.alzforum.org/mutations/1234")
'alzforum.mutation:1234'

Dog food:

>>> curie_from_iri("https://bioregistry.io/DRON:00023232")
'dron:00023232'

IRIs from Identifiers.org (https and http, colon and slash):

>>> curie_from_iri("https://identifiers.org/aop.relationships:5")
'aop.relationships:5'
>>> curie_from_iri("http://identifiers.org/aop.relationships:5")
'aop.relationships:5'
>>> curie_from_iri("https://identifiers.org/aop.relationships/5")
'aop.relationships:5'
>>> curie_from_iri("http://identifiers.org/aop.relationships/5")
'aop.relationships:5'

IRI from N2T >>> curie_from_iri(”https://n2t.net/aop.relationships:5”) ‘aop.relationships:5’

IRI from an OBO PURL (with preferred prefix) >>> curie_from_iri(”http://purl.obolibrary.org/obo/DRON_00023232”, use_preferred=True) ‘DRON:00023232’