CellosaurusAligner

class CellosaurusAligner(force_download=None)

Bases: Aligner

Aligner for the Cellosaurus.

Instantiate the aligner.

Attributes Summary

curation_header	Header to put on the curation table, corresponding to get_curation_row()
key	The key for the external registry

Methods Summary

get_skip()	Get the skipped Cellosaurus identifiers.
getter([keep_missing_uri])	Get the Cellosaurus registry.

Attributes Documentation

curation_header: ClassVar[Sequence[str]] = ('name', 'homepage', 'category', 'uri_format')

Header to put on the curation table, corresponding to get_curation_row()

key: ClassVar[str] = 'cellosaurus'

The key for the external registry

Methods Documentation

get_skip()

Get the skipped Cellosaurus identifiers.

Return type

Mapping[str, str]

getter(keep_missing_uri=True)

Get the Cellosaurus registry.