PrefixCommonsAligner¶
- class PrefixCommonsAligner(force_download=None)[source]¶
Bases:
Aligner
Aligner for Prefix Commons.
Instantiate the aligner.
Attributes Summary
Header to put on the curation table, corresponding to
get_curation_row()
Should new entries be included automatically? Only set this true for aligners of very high confidence (e.g., OBO Foundry but not BioPortal)
The key for the external registry
Methods Summary
get_curation_row
(external_id, external_entry)Prepare curation rows for unaligned Prefix Commons registry entries.
get_skip
()Get skip prefixes.
getter
()Get the Life Science Registry.
Attributes Documentation
- curation_header: ClassVar[Sequence[str]] = ('name', 'synonyms', 'description', 'example', 'pattern', 'uri_format')¶
Header to put on the curation table, corresponding to
get_curation_row()
- include_new: ClassVar[bool] = False¶
Should new entries be included automatically? Only set this true for aligners of very high confidence (e.g., OBO Foundry but not BioPortal)
Methods Documentation
- get_curation_row(external_id, external_entry)[source]¶
Prepare curation rows for unaligned Prefix Commons registry entries.
- getter()¶
Get the Life Science Registry.