BioContextAligner
- class BioContextAligner(force_download=None)[source]
Bases:
Aligner
Aligner for BioContext.
Instantiate the aligner.
Attributes Summary
Header to put on the curation table, corresponding to
get_curation_row()
The key for the external registry
Methods Summary
get_curation_row
(external_id, external_entry)Prepare curation rows for unaligned BioContext registry entries.
get_skip
()Get entries for BioContext that should be skipped.
getter
()Get the BioContext context map.
prepare_external
(external_id, external_entry)Prepare BioContext data to be added to the BioContext for each BioPortal registry entry.
Attributes Documentation
- curation_header: ClassVar[Sequence[str]] = ['uri_format', 'identifiers', 'purl']
Header to put on the curation table, corresponding to
get_curation_row()
Methods Documentation
- get_curation_row(external_id, external_entry)[source]
Prepare curation rows for unaligned BioContext registry entries.
- getter()
Get the BioContext context map.