NcbiAligner
- class NcbiAligner(force_download=None)[source]
Bases:
Aligner
Aligner for NCBI xref registry.
Instantiate the aligner.
Attributes Summary
Header to put on the curation table, corresponding to
get_curation_row()
Keyword arguments to pass to the getter function on call
The key for the external registry
Methods Summary
get_curation_row
(external_id, external_entry)Return the relevant fields from an NCBI entry for pretty-printing.
getter
()Get the NCBI data.
Attributes Documentation
- curation_header: ClassVar[Sequence[str]] = ('name', 'example', 'homepage')
Header to put on the curation table, corresponding to
get_curation_row()
- getter_kwargs: ClassVar[Optional[Mapping[str, Any]]] = {'force_download': False}
Keyword arguments to pass to the getter function on call
Methods Documentation