OLSAligner
- class OLSAligner[source]
Bases:
Aligner
Aligner for the OLS.
Instantiate the aligner.
Attributes Summary
Header to put on the curation table, corresponding to
get_curation_row()
Should new entries be included automatically? Only set this true for aligners of very high confidence (e.g., OBO Foundry but not BioPortal)
The key for the external registry
Methods Summary
get_curation_row
(external_id, external_entry)Prepare curation rows for unaligned BioPortal registry entries.
get_skip
()Get skipped entries from OLS.
getter
()Get the OLS registry.
Attributes Documentation
- curation_header: ClassVar[Sequence[str]] = ('name',)
Header to put on the curation table, corresponding to
get_curation_row()
- include_new: ClassVar[bool] = True
Should new entries be included automatically? Only set this true for aligners of very high confidence (e.g., OBO Foundry but not BioPortal)
Methods Documentation
- get_curation_row(external_id, external_entry)[source]
Prepare curation rows for unaligned BioPortal registry entries.
- getter()
Get the OLS registry.