get_pattern_map(*, include_synonyms=False, remapping=None, use_preferred=False, blacklist=None)[source]

Get a mapping from Bioregistry prefixes to their regular expression patterns.

  • include_synonyms (bool) – Should synonyms of each prefix also be included as additional prefixes, but with the same URI prefix?

  • remapping (Optional[Mapping[str, str]]) – A mapping from bioregistry prefixes to preferred prefixes.

  • use_preferred (bool) – Should preferred prefixes be used? Set this to true if you’re in the OBO context.

  • blacklist (Optional[Collection]) – Prefixes to skip

Return type

Mapping[str, str]


A mapping from prefixes to regular expression pattern strings.