GoAligner
- class GoAligner[source]
Bases:
Aligner
An aligner for the Gene Ontology (GO) registry.
Instantiate the aligner.
Attributes Summary
Header to put on the curation table, corresponding to
get_curation_row()
The key for the external registry
Methods Summary
get_curation_row
(external_id, external_entry)Prepare curation rows for unaligned GO registry entries.
get_skip
()Get the skipped GO identifiers.
getter
()Get the GO registry.
prepare_external
(external_id, external_entry)Prepare GO data to be added to the bioregistry for each GO registry entry.
Attributes Documentation
- curation_header: ClassVar[Sequence[str]] = ('name', 'description')
Header to put on the curation table, corresponding to
get_curation_row()
Methods Documentation
- get_curation_row(external_id, external_entry)[source]
Prepare curation rows for unaligned GO registry entries.
- getter()
Get the GO registry.