EDAMAligner
- class EDAMAligner[source]
Bases:
Aligner
Aligner for the EDAM ontology.
Instantiate the aligner.
Attributes Summary
Set this if there's another part of the data besides the ID that should be matched
Header to put on the curation table, corresponding to
get_curation_row()
The key for the external registry
Methods Summary
get_curation_row
(external_id, external_entry)Prepare curation rows for unaligned EDAM ontology classes.
get_skip
()Get entries that should be skipped and their reasons.
getter
()Get the EDAM registry.
Attributes Documentation
- alt_key_match: ClassVar[Optional[str]] = 'name'
Set this if there’s another part of the data besides the ID that should be matched
- curation_header: ClassVar[Sequence[str]] = ('name', 'description')
Header to put on the curation table, corresponding to
get_curation_row()
Methods Documentation
- get_curation_row(external_id, external_entry)[source]
Prepare curation rows for unaligned EDAM ontology classes.
- getter()
Get the EDAM registry.