CellosaurusAligner
- class CellosaurusAligner[source]
Bases:
Aligner
Aligner for the Cellosaurus.
Instantiate the aligner.
Attributes Summary
Header to put on the curation table, corresponding to
get_curation_row()
The key for the external registry
Methods Summary
get_curation_row
(external_id, external_entry)Prepare curation rows for unaligned BioPortal registry entries.
get_skip
()Get the skipped Cellosaurus identifiers.
getter
([keep_missing_uri])Get the Cellosaurus registry.
Attributes Documentation
- curation_header: ClassVar[Sequence[str]] = ('name', 'homepage', 'category', 'uri_format')
Header to put on the curation table, corresponding to
get_curation_row()
Methods Documentation
- get_curation_row(external_id, external_entry)[source]
Prepare curation rows for unaligned BioPortal registry entries.
- getter(keep_missing_uri=True)
Get the Cellosaurus registry.