OBOFoundryAligner
- class OBOFoundryAligner(force_download=None)[source]
Bases:
Aligner
Aligner for the OBO Foundry.
Instantiate the aligner.
Attributes Summary
Header to put on the curation table, corresponding to
get_curation_row()
Should new entries be included automatically? Only set this true for aligners of very high confidence (e.g., OBO Foundry but not BioPortal)
The key for the external registry
Methods Summary
get_skip
()Get the prefixes in the OBO Foundry that should be skipped.
getter
()Get the OBO Foundry registry.
Attributes Documentation
- curation_header: ClassVar[Sequence[str]] = ('deprecated', 'name', 'description')
Header to put on the curation table, corresponding to
get_curation_row()
- include_new: ClassVar[bool] = True
Should new entries be included automatically? Only set this true for aligners of very high confidence (e.g., OBO Foundry but not BioPortal)
Methods Documentation
- getter()
Get the OBO Foundry registry.