Command Line Interface
bioregistry automatically installs the command bioregistry
. See
bioregistry --help
for usage details.
bioregistry
Run the Bioregistry CLI.
bioregistry [OPTIONS] COMMAND [ARGS]...
Options
- --version
Show the version and exit.
align
Align all external registries.
bioregistry align [OPTIONS]
compare
Compare the registries.
bioregistry compare [OPTIONS]
Options
- --png
download
Download/update the external entries in the Bioregistry.
bioregistry download [OPTIONS]
export
Export the Bioregistry.
bioregistry export [OPTIONS]
lint
Run the lint commands.
bioregistry lint [OPTIONS]
update
Update the Bioregistry.
bioregistry update [OPTIONS]
web
Run the web application.
bioregistry web [OPTIONS]
Options
- --host <host>
Flask host.
- Default
0.0.0.0
- --port <port>
Flask port.
- Default
5000
- --with-gunicorn
Use gunicorn instead of flask dev server
- --workers <workers>
Number of workers (when using –with-gunicorn)
- -v, --verbose
Enable verbose mode. More -v’s means more verbose.
- --debug