bioregistry
v0.4.118
Getting Started
Installation
Schema
Command Line Interface
bioregistry
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A
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B
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C
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D
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G
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W
Symbols
--debug
bioregistry-web command line option
--host
bioregistry-web command line option
--paper
bioregistry-compare command line option
--port
bioregistry-web command line option
--timeout
bioregistry-web command line option
--verbose
bioregistry-web command line option
--version
bioregistry command line option
--with-gunicorn
bioregistry-web command line option
--workers
bioregistry-web command line option
-v
bioregistry-web command line option
A
add_triples() (Attributable method)
(Collection method)
(Registry method)
appears_in (Resource attribute)
as_context_jsonld() (Collection method)
as_prefix_map() (Collection method)
authors (Collection attribute)
availability (Registry attribute)
B
banana (Resource attribute)
biolink (Resource attribute)
bioportal (Resource attribute)
bioregistry command line option
--version
bioregistry-compare command line option
--paper
bioregistry-web command line option
--debug
--host
--port
--timeout
--verbose
--with-gunicorn
--workers
-v
bioregistry.schema.struct
module
bioregistry_prefix (Registry attribute)
C
cellosaurus (Resource attribute)
cheminf (Resource attribute)
code (Provider attribute)
comment (Resource attribute)
contact (Registry attribute)
(Resource attribute)
context (Collection attribute)
contributor (Resource attribute)
contributor_extras (Resource attribute)
custom_prefix_map (Context attribute)
D
DEFAULT_URI_FORMATTER_PRIORITY (Resource attribute)
depends_on (Resource attribute)
deprecated (Resource attribute)
description (Collection attribute)
(Context attribute)
(Provider attribute)
(Registry attribute)
(Resource attribute)
download (Registry attribute)
download_json (Resource attribute)
download_obo (Resource attribute)
download_owl (Resource attribute)
E
email (Attributable attribute)
example (Registry attribute)
(Resource attribute)
example_extras (Resource attribute)
F
fairsharing (Resource attribute)
G
get_banana() (Resource method)
get_code_link() (Registry method)
get_contact() (Resource method)
get_contact_email() (Resource method)
get_contact_github() (Resource method)
get_contact_name() (Resource method)
get_contact_orcid() (Resource method)
get_default_format() (Resource method)
get_default_uri() (Resource method)
get_description() (Resource method)
get_download_obo() (Resource method)
get_download_obograph() (Resource method)
get_download_owl() (Resource method)
get_example() (Resource method)
get_external() (Resource method)
get_extra_providers() (Resource method)
get_homepage() (Resource method)
get_identifiers_org_prefix() (Resource method)
get_json_schema() (in module bioregistry.schema.struct)
get_license() (Resource method)
get_mapped_prefix() (Resource method)
get_mappings() (Resource method)
get_miriam_uri_format() (Resource method)
get_miriam_uri_prefix() (Resource method)
get_n2t_uri_format() (Resource method)
get_name() (Resource method)
get_namespace_in_lui() (Resource method)
get_nt2_uri_prefix() (Resource method)
get_obo_preferred_prefix() (Resource method)
get_obofoundry_prefix() (Resource method)
get_obofoundry_uri_format() (Resource method)
get_obofoundry_uri_prefix() (Resource method)
get_ols_prefix() (Resource method)
get_ols_uri_format() (Resource method)
get_ols_uri_prefix() (Resource method)
get_pattern() (Resource method)
get_pattern_re() (Resource method)
get_preferred_prefix() (Resource method)
get_prefix_key() (Resource method)
get_prefixcommons_uri_format() (Resource method)
get_provider_uri_format() (Registry method)
get_provider_uri_prefix() (Registry method)
get_publications() (Resource method)
get_repository() (Resource method)
get_resolver_uri_format() (Registry method)
get_scholia_prefix() (Resource method)
get_short_description() (Resource method)
get_short_name() (Registry method)
get_synonyms() (Resource method)
get_twitter() (Resource method)
get_uri_format() (Resource method)
get_uri_prefix() (Resource method)
get_version() (Resource method)
github (Attributable attribute)
go (Resource attribute)
H
has_canonical (Resource attribute)
homepage (Provider attribute)
(Registry attribute)
(Resource attribute)
I
identifier (Collection attribute)
include_synonyms (Context attribute)
is_canonical_identifier() (Resource method)
is_deprecated() (Resource method)
is_known_identifier() (Resource method)
L
license (Registry attribute)
(Resource attribute)
logo_url (Registry attribute)
M
maintainers (Context attribute)
mappings (Resource attribute)
miriam (Resource attribute)
miriam_standardize_identifier() (Resource method)
module
bioregistry.schema.struct
N
n2t (Resource attribute)
name (Attributable attribute)
(Collection attribute)
(Context attribute)
(Provider attribute)
(Registry attribute)
(Resource attribute)
namespace_in_lui (Resource attribute)
ncbi (Resource attribute)
no_own_terms (Resource attribute)
O
obofoundry (Resource attribute)
ols (Resource attribute)
ontobee (Resource attribute)
orcid (Attributable attribute)
(Author attribute)
P
part_of (Resource attribute)
pattern (Resource attribute)
preferred_prefix (Resource attribute)
prefix (Registry attribute)
(Resource attribute)
prefix_priority (Context attribute)
prefix_remapping (Context attribute)
prefixcommons (Resource attribute)
proprietary (Resource attribute)
provider_uri_format (Registry attribute)
providers (Resource attribute)
provides (Resource attribute)
R
references (Resource attribute)
repository (Resource attribute)
resolve() (Provider method)
(Registry method)
resolver_type (Registry attribute)
resolver_uri_format (Registry attribute)
resources (Collection attribute)
reviewer (Resource attribute)
S
score() (Registry method)
short_name (Registry attribute)
standardize_identifier() (Resource method)
synonyms (Resource attribute)
T
twitter (Resource attribute)
U
uniprot (Resource attribute)
uri_format (Provider attribute)
(Resource attribute)
URI_FORMATTERS (Resource attribute)
uri_prefix_priority (Context attribute)
use_preferred (Context attribute)
V
version (Resource attribute)
W
wikidata (Resource attribute)
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v: v0.4.118
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