NormalizedNamableReference

class NormalizedNamableReference(*, prefix: Prefix, identifier: str, name: str | None = None)[source]

Bases: NormalizedReference, NamableReference

Extends curies.NamableReference to normalize the prefix against the Bioregistry.

>>> NormalizedNamedReference(prefix="go", identifier="0032571")
NormalizedNamedReference(prefix='go', identifier='0032571', name=None)

With a name:

>>> NormalizedNamedReference(prefix="go", identifier="0032571", name="response to vitamin K")
NormalizedNamedReference(prefix='go', identifier='0032571', name='response to vitamin K')

Standardizes capitalization to lowercase:

>>> NormalizedNamedReference(prefix="GO", identifier="0032571", name="response to vitamin K")
NormalizedNamedReference(prefix='go', identifier='0032571', name='response to vitamin K')

Standardizes prefix synonyms to lowercase:

>>> NormalizedNamedReference(prefix="GOBP", identifier="0032571", name="response to vitamin K")
NormalizedNamedReference(prefix='go', identifier='0032571', name='response to vitamin K')

Create a new model by parsing and validating input data from keyword arguments.

Raises [ValidationError][pydantic_core.ValidationError] if the input data cannot be validated to form a valid model.

self is explicitly positional-only to allow self as a field name.

Attributes Summary

model_config

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

Attributes Documentation

model_config = {'frozen': True}: Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].