Source code for bioregistry.curation.literature

"""Utilities for working with the data produced by the semi-automated curation workflow."""

import enum

__all__ = [
    "COLUMNS",
    "CurationRelevance",
]

COLUMNS = [
    "pubmed",
    "relevant",
    "orcid",
    "date_curated",
    "relevancy_type",
    "pr_added",  # links back to the PR where curations were done
    "notes",
]


[docs] class CurationRelevance(str, enum.Enum): """An enumeration for curation relevance.""" #: A resource for new primary identifiers new_prefix = enum.auto() #: A resolver for existing identifiers new_provider = enum.auto() #: A new publication for an existing prefix new_publication = enum.auto() #: Papers linking to external non-identifier resources such as software repositories, visualization tools, etc. not_identifiers_resource = enum.auto() #: Self-contained papers that do not link to any external resources non_resource_paper = enum.auto() #: An existing entry in the bioregistry existing = enum.auto() #: Not clear how to curate in the bioregistry, follow up discussion required unclear = enum.auto() #: Completely unrelated information irrelevant_other = enum.auto() #: Relevant for training purposes, but not curated in Bioregistry due to poor/unknown quality not_notable = enum.auto()