Alignment

bioregistry.external Package

Acquisition, processing, and alignment of external registries.

Functions

get_biocontext([force_download])	Get the BioContext context map.
get_biolink([force_download])	Get Biolink.
get_bioportal([force_download])	Get the BioPortal registry.
get_cellosaurus([force_download, ...])	Get the Cellosaurus registry.
get_cheminf([force_download])	Get the Chemical Information Ontology registry.
get_fairsharing(*[, force_download, ...])	Get the FAIRsharing registry.
get_go([force_download])	Get the GO registry.
get_miriam([force_download, force_process])	Get the MIRIAM registry.
get_n2t([force_download])	Get the N2T registry.
get_ncbi([force_download])	Get the NCBI data.
get_obofoundry([force_download, force_process])	Get the OBO Foundry registry.
get_ols([force_download])	Get the OLS registry.
get_ontobee([force_download])	Get the OntoBee registry.
get_prefixcommons([force_download, ...])	Get the Life Science Registry.
get_uniprot([force_download])	Get the UniProt registry.
get_wikidata([force_download])	Get the wikidata registry.
get_edam([force_download])	Get the EDAM registry.
get_re3data([force_download])	Get the re3data registry.
get_hl7([force_download])	Get HL7 OIDs.
get_bartoc([force_download])	Get the BARTOC registry.
get_integbio(*[, force_download])	Get the integbio resource.
get_lov(*[, force_download, force_refresh])	Get the LOV data cloud registry.
get_pathguide(*[, force_download])	Get the Pathguide metdata.
get_togoid(*[, force_download, force_refresh])	Get the TogoID data.
get_zazuko([force_download])	Get the Zazuko context map.
get_rrid([force_download])	Get RRIDs.