get_pattern_map(*, include_synonyms: bool = False, remapping: Mapping[str, str] | None = None, blacklist: Collection | None = None) Mapping[str, str][source]

Get a mapping from Bioregistry prefixes to their regular expression patterns.

  • include_synonyms – Should synonyms of each prefix also be included as additional prefixes, but with the same URI prefix?

  • remapping – A mapping from bioregistry prefixes to preferred prefixes.

  • blacklist – Prefixes to skip


A mapping from prefixes to regular expression pattern strings.