# -*- coding: utf-8 -*-
"""Align NCBI with the Bioregistry."""
import textwrap
from typing import Sequence
from bioregistry.align.utils import Aligner
from bioregistry.external.ncbi import get_ncbi
__all__ = ["NcbiAligner"]
[docs]class NcbiAligner(Aligner):
"""Aligner for NCBI xref registry."""
key = "ncbi"
getter = get_ncbi
getter_kwargs = dict(force_download=False)
curation_header = ("name", "example", "homepage")
[docs] def get_curation_row(self, external_id, external_entry) -> Sequence[str]:
"""Return the relevant fields from an NCBI entry for pretty-printing."""
return [
textwrap.shorten(external_entry["name"], 50),
external_entry.get("example"),
external_entry.get("homepage"),
]
if __name__ == "__main__":
NcbiAligner.cli()